mims-harvard/ToolUniverse
Democratizing AI scientists with ToolUniverse
ARCHETYPE
Skill Collector
Ten-plus skills loaded on demand. A procedural-knowledge library.
Copy this rig
# review before running: this installs third-party code $ claude mcp add tooluniverse -e PYTHONIOENCODING=YOUR_PYTHONIOENCODING -e PYTORCH_ENABLE_MPS_FALLBACK=YOUR_PYTORCH_ENABLE_MPS_FALLBACK -e PYTORCH_MPS_HIGH_WATERMARK_RATIO=YOUR_PYTORCH_MPS_HIGH_WATERMARK_RATIO -- uvx tooluniverse $ npx degit mims-harvard/ToolUniverse/skills ./rig-tooluniverse/skills
MCP servers are added to Claude Code at local scope; env vars are shown as YOUR_… placeholders — we never store values. Files are fetched with degit into a separate folder so you can review before merging.
$ claude mcp add tooluniverse -e PYTHONIOENCODING=YOUR_PYTHONIOENCODING -e PYTORCH_ENABLE_MPS_FALLBACK=YOUR_PYTORCH_ENABLE_MPS_FALLBACK -e PYTORCH_MPS_HIGH_WATERMARK_RATIO=YOUR_PYTORCH_MPS_HIGH_WATERMARK_RATIO -- uvx tooluniverse $ npx degit mims-harvard/ToolUniverse/plugin/skills/setup-tooluniverse .claude/skills/setup-tooluniverse $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-acmg-variant-classification .claude/skills/tooluniverse-acmg-variant-classification $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-admet-prediction .claude/skills/tooluniverse-admet-prediction $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-adverse-event-detection .claude/skills/tooluniverse-adverse-event-detection $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-adverse-outcome-pathway .claude/skills/tooluniverse-adverse-outcome-pathway $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-aging-senescence .claude/skills/tooluniverse-aging-senescence $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-antibody-engineering .claude/skills/tooluniverse-antibody-engineering $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-antigravity-plugin .claude/skills/tooluniverse-antigravity-plugin $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-binder-discovery .claude/skills/tooluniverse-binder-discovery $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-bioinformatics-resource-discovery .claude/skills/tooluniverse-bioinformatics-resource-discovery $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-biomedical-fact-lookup .claude/skills/tooluniverse-biomedical-fact-lookup $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-cancer-classification .claude/skills/tooluniverse-cancer-classification $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-cancer-genomics-tcga .claude/skills/tooluniverse-cancer-genomics-tcga $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-cancer-variant-interpretation .claude/skills/tooluniverse-cancer-variant-interpretation $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-cell-line-profiling .claude/skills/tooluniverse-cell-line-profiling $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-chemical-compound-retrieval .claude/skills/tooluniverse-chemical-compound-retrieval $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-chemical-safety .claude/skills/tooluniverse-chemical-safety $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-chemical-sourcing .claude/skills/tooluniverse-chemical-sourcing $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-claude-code-plugin .claude/skills/tooluniverse-claude-code-plugin $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-clinical-data-integration .claude/skills/tooluniverse-clinical-data-integration $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-clinical-guidelines .claude/skills/tooluniverse-clinical-guidelines $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-clinical-risk-scoring .claude/skills/tooluniverse-clinical-risk-scoring $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-clinical-terminology-lookup .claude/skills/tooluniverse-clinical-terminology-lookup $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-clinical-trial-design .claude/skills/tooluniverse-clinical-trial-design $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-clinical-trial-matching .claude/skills/tooluniverse-clinical-trial-matching $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-clinical-trial-protocol .claude/skills/tooluniverse-clinical-trial-protocol $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-comparative-genomics .claude/skills/tooluniverse-comparative-genomics $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-computational-biophysics .claude/skills/tooluniverse-computational-biophysics $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-crispr-screen-analysis .claude/skills/tooluniverse-crispr-screen-analysis $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-custom-tool .claude/skills/tooluniverse-custom-tool $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-data-integration-analysis .claude/skills/tooluniverse-data-integration-analysis $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-data-wrangling .claude/skills/tooluniverse-data-wrangling $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-database-logins .claude/skills/tooluniverse-database-logins $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-dataset-discovery .claude/skills/tooluniverse-dataset-discovery $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-diagnostic-test-evaluation .claude/skills/tooluniverse-diagnostic-test-evaluation $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-disease-research .claude/skills/tooluniverse-disease-research $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-dose-response .claude/skills/tooluniverse-dose-response $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-drug-drug-interaction .claude/skills/tooluniverse-drug-drug-interaction $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-drug-mechanism-research .claude/skills/tooluniverse-drug-mechanism-research $ npx degit mims-harvard/ToolUniverse/plugin/skills/tooluniverse-drug-regulatory .claude/skills/tooluniverse-drug-regulatory
This rig commits no guardrails. Here is the community baseline instead — the deny/ask rules most often found across all 7,204 rigs:
{
"permissions": {
"deny": [
"Read(./.env)",
"Read(**/.env)",
"Read(~/.ssh/**)",
"Bash(rm -rf *)",
"Read(**/*.pem)",
"Bash(rm -rf /)",
"Bash(git push --force:*)",
"Bash(sudo *)",
"Read(.env)",
"Bash(rm -rf /*)",
"Read(./.env.*)",
"Read(~/.aws/**)",
"Bash(git push --force*)",
"Bash(rm -rf:*)",
"Read(**/*.key)",
"Read(**/.env.*)",
"Bash(sudo:*)",
"Bash(git reset --hard*)",
"Bash(git reset --hard:*)",
"Read(.env.*)"
],
"ask": [
"Bash(git push:*)",
"Bash(git push *)",
"Bash(git commit:*)",
"Bash(rm *)",
"Bash(rm:*)",
"Bash(git rebase *)",
"Bash(wget *)",
"Bash(npm publish:*)",
"Bash(git commit *)",
"Bash(gh pr merge *)"
]
}
} MCP servers (1)
| server | source | est. tokens |
|---|---|---|
| tooluniverse env: PYTHONIOENCODING, PYTORCH_ENABLE_MPS_FALLBACK, PYTORCH_MPS_HIGH_WATERMARK_RATIO | pypi | 2.5k |
Skills (150)
setup-tooluniversetooluniverse-acmg-variant-classificationtooluniverse-admet-predictiontooluniverse-adverse-event-detectiontooluniverse-adverse-outcome-pathwaytooluniverse-aging-senescencetooluniverse-antibody-engineeringtooluniverse-antigravity-plugintooluniverse-binder-discoverytooluniverse-bioinformatics-resource-discoverytooluniverse-biomedical-fact-lookuptooluniverse-cancer-classificationtooluniverse-cancer-genomics-tcgatooluniverse-cancer-variant-interpretationtooluniverse-cell-line-profilingtooluniverse-chemical-compound-retrievaltooluniverse-chemical-safetytooluniverse-chemical-sourcingtooluniverse-claude-code-plugintooluniverse-clinical-data-integrationtooluniverse-clinical-guidelinestooluniverse-clinical-risk-scoringtooluniverse-clinical-terminology-lookuptooluniverse-clinical-trial-designtooluniverse-clinical-trial-matchingtooluniverse-clinical-trial-protocoltooluniverse-comparative-genomicstooluniverse-computational-biophysicstooluniverse-crispr-screen-analysistooluniverse-custom-tooltooluniverse-data-integration-analysistooluniverse-data-wranglingtooluniverse-database-loginstooluniverse-dataset-discoverytooluniverse-diagnostic-test-evaluationtooluniverse-disease-researchtooluniverse-dose-responsetooluniverse-drug-drug-interactiontooluniverse-drug-mechanism-researchtooluniverse-drug-regulatorytooluniverse-drug-repurposingtooluniverse-drug-researchtooluniverse-drug-synergytooluniverse-drug-target-validationtooluniverse-ecology-biodiversitytooluniverse-electron-microscopytooluniverse-enzyme-kineticstooluniverse-epidemiological-analysistooluniverse-epigenomics-chromatintooluniverse-epigenomicstooluniverse-expression-data-retrievaltooluniverse-fastq-qctooluniverse-functional-genomics-screenstooluniverse-gene-disease-associationtooluniverse-gene-enrichmenttooluniverse-gene-liabilitytooluniverse-gene-regulatory-networkstooluniverse-glycobiologytooluniverse-gpcr-structural-pharmacologytooluniverse-gwas-drug-discoverytooluniverse-gwas-finemappingtooluniverse-gwas-snp-interpretationtooluniverse-gwas-study-explorertooluniverse-gwas-trait-to-genetooluniverse-hla-immunogenomicstooluniverse-image-analysistooluniverse-immune-repertoire-analysistooluniverse-immunologytooluniverse-immunotherapy-response-predictiontooluniverse-infectious-diseasetooluniverse-inorganic-physical-chemistrytooluniverse-install-skillstooluniverse-kegg-disease-drugtooluniverse-lab-data-standardizationtooluniverse-lab-protocolstooluniverse-lipidomicstooluniverse-literature-deep-researchtooluniverse-medical-imaging-radiologytooluniverse-mendelian-randomizationtooluniverse-meta-analysistooluniverse-metabolomics-analysistooluniverse-metabolomics-pathwaytooluniverse-metabolomicstooluniverse-metagenomics-analysistooluniverse-microbial-genome-characterizationtooluniverse-microbiome-researchtooluniverse-ml-inference-utilitytooluniverse-model-organism-geneticstooluniverse-molecular-cloningtooluniverse-multi-omics-integrationtooluniverse-multiomic-disease-characterizationtooluniverse-natural-product-dereplicationtooluniverse-network-pharmacologytooluniverse-neurosciencetooluniverse-neurosynth-meta-analysistooluniverse-nfcore-pipelinestooluniverse-nih-funding-landscapetooluniverse-noncoding-rnatooluniverse-nutrition-food-compositiontooluniverse-organic-chemistrytooluniverse-pathway-disease-geneticstooluniverse-peptide-target-deorphanizationtooluniverse-pharmacogenomicstooluniverse-pharmacokineticstooluniverse-pharmacovigilancetooluniverse-phewastooluniverse-phylogeneticstooluniverse-plant-genomicstooluniverse-polygenic-risk-scoretooluniverse-population-genetics-1000genomestooluniverse-population-geneticstooluniverse-precision-medicine-stratificationtooluniverse-precision-oncologytooluniverse-primer-designtooluniverse-product-safety-surveillancetooluniverse-protein-design-campaigntooluniverse-protein-interactionstooluniverse-protein-lof-mechanismtooluniverse-protein-modification-analysistooluniverse-protein-sae-variant-interpretationtooluniverse-protein-structural-annotation-pdbtooluniverse-protein-structure-predictiontooluniverse-protein-structure-retrievaltooluniverse-protein-therapeutic-designtooluniverse-proteomics-analysistooluniverse-proteomics-data-retrievaltooluniverse-publish-tooltooluniverse-rare-disease-diagnosistooluniverse-rare-disease-genomicstooluniverse-regulatory-genomicstooluniverse-regulatory-variant-analysistooluniverse-residue-functional-mechanism-interpretationtooluniverse-rnaseq-deseq2tooluniverse-scientific-peer-reviewtooluniverse-scientific-problem-selectiontooluniverse-scvi-toolstooluniverse-sdktooluniverse-self-reviewtooluniverse-sequence-analysistooluniverse-sequence-retrievaltooluniverse-share-computertooluniverse-single-celltooluniverse-small-molecule-discoverytooluniverse-spatial-omics-analysistooluniverse-spatial-transcriptomicstooluniverse-statistical-modelingtooluniverse-stem-cell-organoidtooluniverse-structural-proteomicstooluniverse-structural-variant-analysistooluniverse-synthetic-biology-parts
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