docxology/template
GitHub template for reproducible research repos — two-layer Python 3.10+/uv monorepo splitting generic infrastructure from per-project code, with pytest coverage gates (60% infra, 90% projects), a 17-stage build pipeline, markdown-to-PDF re
ARCHETYPE
Skill Collector
Ten-plus skills loaded on demand. A procedural-knowledge library.
Copy this rig
$ git clone --depth 1 https://github.com/docxology/template MCP servers are added to Claude Code at local scope; env vars are shown as YOUR_… placeholders — we never store values. Files are fetched with degit into a separate folder so you can review before merging.
$ npx degit docxology/template/.agents/skills/advanced-evaluation .claude/skills/advanced-evaluation $ npx degit docxology/template/.agents/skills/bdi-mental-states .claude/skills/bdi-mental-states $ npx degit docxology/template/.agents/skills/context-compression .claude/skills/context-compression $ npx degit docxology/template/.agents/skills/context-degradation .claude/skills/context-degradation $ npx degit docxology/template/.agents/skills/context-fundamentals .claude/skills/context-fundamentals $ npx degit docxology/template/.agents/skills/context-optimization .claude/skills/context-optimization $ npx degit docxology/template/.agents/skills/evaluation .claude/skills/evaluation $ npx degit docxology/template/.agents/skills/filesystem-context .claude/skills/filesystem-context $ npx degit docxology/template/.agents/skills/harness-engineering .claude/skills/harness-engineering $ npx degit docxology/template/.agents/skills/hosted-agents .claude/skills/hosted-agents $ npx degit docxology/template/.agents/skills/latent-briefing .claude/skills/latent-briefing $ npx degit docxology/template/.agents/skills/long-horizon-prompting .claude/skills/long-horizon-prompting $ npx degit docxology/template/.agents/skills/memory-systems .claude/skills/memory-systems $ npx degit docxology/template/.agents/skills/multi-agent-patterns .claude/skills/multi-agent-patterns $ npx degit docxology/template/.agents/skills/project-development .claude/skills/project-development $ npx degit docxology/template/.agents/skills/self-improvement-loops .claude/skills/self-improvement-loops $ npx degit docxology/template/.agents/skills/tool-design .claude/skills/tool-design $ npx degit docxology/template/.cursor/skills/continual-learning .claude/skills/continual-learning $ npx degit docxology/template/.cursor/skills/gauss .claude/skills/gauss $ npx degit docxology/template/projects/templates/template_active_inference/.agents/skills/template-active-inference .claude/skills/template-active-inference $ npx degit docxology/template/projects/templates/template_advanced_literature_review/.agents/skills/template-advanced-literature-review .claude/skills/template-advanced-literature-review $ npx degit docxology/template/projects/templates/template_autopoiesis/.agents/skills/template-autopoiesis .claude/skills/template-autopoiesis $ npx degit docxology/template/projects/templates/template_autoresearch_project/.agents/skills/template-autoresearch-project .claude/skills/template-autoresearch-project $ npx degit docxology/template/projects/templates/template_autoscientists/.agents/skills/template-autoscientists .claude/skills/template-autoscientists $ npx degit docxology/template/projects/templates/template_code_project/.agents/skills/template-code-project .claude/skills/template-code-project $ npx degit docxology/template/projects/templates/template_data_descriptor/.agents/skills/template-data-descriptor .claude/skills/template-data-descriptor $ npx degit docxology/template/projects/templates/template_eda_notebook/.agents/skills/template-eda-notebook .claude/skills/template-eda-notebook $ npx degit docxology/template/projects/templates/template_experiment_tree/.agents/skills/template-experiment-tree .claude/skills/template-experiment-tree $ npx degit docxology/template/projects/templates/template_formal/.agents/skills/template-formal .claude/skills/template-formal $ npx degit docxology/template/projects/templates/template_gold_refinement/.agents/skills/template-gold-refinement .claude/skills/template-gold-refinement $ npx degit docxology/template/projects/templates/template_literature_meta_analysis/.agents/skills/template-literature-meta-analysis .claude/skills/template-literature-meta-analysis $ npx degit docxology/template/projects/templates/template_madlib/.agents/skills/template-madlib .claude/skills/template-madlib $ npx degit docxology/template/projects/templates/template_methods_paper/.agents/skills/template-methods-paper .claude/skills/template-methods-paper $ npx degit docxology/template/projects/templates/template_newspaper/.agents/skills/template-newspaper .claude/skills/template-newspaper $ npx degit docxology/template/projects/templates/template_pitch_deck/.agents/skills/template-pitch-deck .claude/skills/template-pitch-deck $ npx degit docxology/template/projects/templates/template_pools_rules_tools/.agents/skills/template-pools-rules-tools .claude/skills/template-pools-rules-tools $ npx degit docxology/template/projects/templates/template_prose_project/.agents/skills/template-prose-project .claude/skills/template-prose-project $ npx degit docxology/template/projects/templates/template_redacted_report/.agents/skills/template-redacted-report .claude/skills/template-redacted-report $ npx degit docxology/template/projects/templates/template_registered_report/.agents/skills/template-registered-report .claude/skills/template-registered-report $ npx degit docxology/template/projects/templates/template_search_project/.agents/skills/template-search-project .claude/skills/template-search-project
This rig commits no guardrails. Here is the community baseline instead — the deny/ask rules most often found across all 7,204 rigs:
{
"permissions": {
"deny": [
"Read(./.env)",
"Read(**/.env)",
"Read(~/.ssh/**)",
"Bash(rm -rf *)",
"Read(**/*.pem)",
"Bash(rm -rf /)",
"Bash(git push --force:*)",
"Bash(sudo *)",
"Read(.env)",
"Bash(rm -rf /*)",
"Read(./.env.*)",
"Read(~/.aws/**)",
"Bash(git push --force*)",
"Bash(rm -rf:*)",
"Read(**/*.key)",
"Read(**/.env.*)",
"Bash(sudo:*)",
"Bash(git reset --hard*)",
"Bash(git reset --hard:*)",
"Read(.env.*)"
],
"ask": [
"Bash(git push:*)",
"Bash(git push *)",
"Bash(git commit:*)",
"Bash(rm *)",
"Bash(rm:*)",
"Bash(git rebase *)",
"Bash(wget *)",
"Bash(npm publish:*)",
"Bash(git commit *)",
"Bash(gh pr merge *)"
]
}
} Skills (44)
advanced-evaluationbdi-mental-statescontext-compressioncontext-degradationcontext-fundamentalscontext-optimizationevaluationfilesystem-contextharness-engineeringhosted-agentslatent-briefinglong-horizon-promptingmemory-systemsmulti-agent-patternsproject-developmentself-improvement-loopstool-designcontinual-learninggauss-open-gauss-clitemplate-active-inferencetemplate-advanced-literature-reviewtemplate-autopoiesistemplate-autoresearch-projecttemplate-autoscientiststemplate-code-projecttemplate-data-descriptortemplate-eda-notebooktemplate-experiment-treetemplate-formaltemplate-gold-refinementtemplate-literature-meta-analysistemplate-madlibtemplate-methods-papertemplate-newspapertemplate-pitch-decktemplate-pools-rules-toolstemplate-prose-projecttemplate-redacted-reporttemplate-registered-reporttemplate-search-projecttemplate-siatemplate-storybooktemplate-templatetemplate-textbook
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