aipoch/open-science
The open-source AI research workbench for scientific research and agent workflows. Local-first, model-agnostic desktop app with extensible skills, MCP tools and connectors, Python/R execution and traceable artifacts for reproducible researc
ARCHETYPE
Skill Collector
Ten-plus skills loaded on demand. A procedural-knowledge library.
Copy this rig
$ git clone --depth 1 https://github.com/aipoch/open-science MCP servers are added to Claude Code at local scope; env vars are shown as YOUR_… placeholders — we never store values. Files are fetched with degit into a separate folder so you can review before merging.
$ npx degit aipoch/open-science/resources/skills/alphafold2 .claude/skills/alphafold2 $ npx degit aipoch/open-science/resources/skills/boltz .claude/skills/boltz $ npx degit aipoch/open-science/resources/skills/borzoi .claude/skills/borzoi $ npx degit aipoch/open-science/resources/skills/chai1 .claude/skills/chai1 $ npx degit aipoch/open-science/resources/skills/compute-env-setup .claude/skills/compute-env-setup $ npx degit aipoch/open-science/resources/skills/customize .claude/skills/customize $ npx degit aipoch/open-science/resources/skills/diffdock .claude/skills/diffdock $ npx degit aipoch/open-science/resources/skills/env-management .claude/skills/env-management $ npx degit aipoch/open-science/resources/skills/esmfold2 .claude/skills/esmfold2 $ npx degit aipoch/open-science/resources/skills/evo2 .claude/skills/evo2 $ npx degit aipoch/open-science/resources/skills/fair-esm2 .claude/skills/fair-esm2 $ npx degit aipoch/open-science/resources/skills/figure-composer .claude/skills/figure-composer $ npx degit aipoch/open-science/resources/skills/figure-style .claude/skills/figure-style $ npx degit aipoch/open-science/resources/skills/indication-dossier .claude/skills/indication-dossier $ npx degit aipoch/open-science/resources/skills/ligandmpnn .claude/skills/ligandmpnn $ npx degit aipoch/open-science/resources/skills/literature-review .claude/skills/literature-review $ npx degit aipoch/open-science/resources/skills/openfold3 .claude/skills/openfold3 $ npx degit aipoch/open-science/resources/skills/paper-narrative .claude/skills/paper-narrative $ npx degit aipoch/open-science/resources/skills/proteinmpnn .claude/skills/proteinmpnn $ npx degit aipoch/open-science/resources/skills/remote-compute-ssh .claude/skills/remote-compute-ssh $ npx degit aipoch/open-science/resources/skills/scgpt .claude/skills/scgpt $ npx degit aipoch/open-science/resources/skills/scvi-tools .claude/skills/scvi-tools $ npx degit aipoch/open-science/resources/skills/self-awareness .claude/skills/self-awareness $ npx degit aipoch/open-science/resources/skills/skill-creator .claude/skills/skill-creator $ npx degit aipoch/open-science/resources/skills/solublempnn .claude/skills/solublempnn
This rig commits no guardrails. Here is the community baseline instead — the deny/ask rules most often found across all 7,204 rigs:
{
"permissions": {
"deny": [
"Read(./.env)",
"Read(**/.env)",
"Read(~/.ssh/**)",
"Bash(rm -rf *)",
"Read(**/*.pem)",
"Bash(rm -rf /)",
"Bash(git push --force:*)",
"Bash(sudo *)",
"Read(.env)",
"Bash(rm -rf /*)",
"Read(./.env.*)",
"Read(~/.aws/**)",
"Bash(git push --force*)",
"Bash(rm -rf:*)",
"Read(**/*.key)",
"Read(**/.env.*)",
"Bash(sudo:*)",
"Bash(git reset --hard*)",
"Bash(git reset --hard:*)",
"Read(.env.*)"
],
"ask": [
"Bash(git push:*)",
"Bash(git push *)",
"Bash(git commit:*)",
"Bash(rm *)",
"Bash(rm:*)",
"Bash(git rebase *)",
"Bash(wget *)",
"Bash(npm publish:*)",
"Bash(git commit *)",
"Bash(gh pr merge *)"
]
}
} Skills (25)
Similar rigs
Yichen-ZJU/claude-for-research
Autonomous research for Claude Code: literature, ideas, unattended experiments, writing and review. 115 skills, two loops.
Skill Collector 7.0k tok ·
cinicu/opencode-dotfiles
OpenCode dotfiles — 19 AI agent skills + 8 MCP servers + persistent memory (memory-keeper). Cross-platform install, screenshot OCR, custom CLI toolchain. Research methodology, systematic reviews, critical analysis, skill-creator.
Skill Collector 1.1k tok ·
PleasePrompto/ductor
Control Claude Code, Codex CLI and Gemini CLI from Telegram. Live streaming, persistent memory, cron jobs, webhooks, Docker sandboxing.
Minimalist 1.9k tok ·
Abdullah-967/my-claudec0de-setup-2026
Transform Claude Code into a professional autonomous agent. This setup includes structured context handoffs, a features.json tracking system, and built-in workflows for synchronization and semantic commits.
Pragmatist 750 tok ·