ai4curation/ai-gene-review
Demonstration of AI review of existing functional annotations
ARCHETYPE
Skill Collector
Ten-plus skills loaded on demand. A procedural-knowledge library.
Copy this rig
# review before running: this installs third-party code
$ npx degit ai4curation/ai-gene-review/.claude ./rig-ai-gene-review # inspect, then merge into .claude/ MCP servers are added to Claude Code at local scope; env vars are shown as YOUR_… placeholders — we never store values. Files are fetched with degit into a separate folder so you can review before merging.
$ npx degit ai4curation/ai-gene-review/.claude/skills/aigr-pr-review .claude/skills/aigr-pr-review $ npx degit ai4curation/ai-gene-review/.claude/skills/annotation-reviewer .claude/skills/annotation-reviewer $ npx degit ai4curation/ai-gene-review/.claude/skills/bioinformatics-analyzer .claude/skills/bioinformatics-analyzer $ npx degit ai4curation/ai-gene-review/.claude/skills/bioreason-predictions .claude/skills/bioreason-predictions $ npx degit ai4curation/ai-gene-review/.claude/skills/boss .claude/skills/boss $ npx degit ai4curation/ai-gene-review/.claude/skills/core-function-synthesizer .claude/skills/core-function-synthesizer $ npx degit ai4curation/ai-gene-review/.claude/skills/export-proposed-terms .claude/skills/export-proposed-terms $ npx degit ai4curation/ai-gene-review/.claude/skills/gocam-curation .claude/skills/gocam-curation $ npx degit ai4curation/ai-gene-review/.claude/skills/module-curation .claude/skills/module-curation $ npx degit ai4curation/ai-gene-review/.claude/skills/openscientist-hypothesis .claude/skills/openscientist-hypothesis $ npx degit ai4curation/ai-gene-review/.claude/skills/pathway-inference-agent .claude/skills/pathway-inference-agent $ npx degit ai4curation/ai-gene-review/.claude/skills/pm .claude/skills/pm $ npx degit ai4curation/ai-gene-review/.claude/skills/reference-findings-summarizer .claude/skills/reference-findings-summarizer $ npx degit ai4curation/ai-gene-review/.claude/skills/review-function-prediction .claude/skills/review-function-prediction $ npx degit ai4curation/ai-gene-review/.claude/skills/review .claude/skills/review $ npx degit ai4curation/ai-gene-review/.claude/skills/rule-reviewer .claude/skills/rule-reviewer
Merge into .claude/settings.json (project) or ~/.claude/settings.json (user). Hook commands reference scripts in the source repo — copy those too.
{
"hooks": {
"PreToolUse": [
{
"matcher": "Edit|MultiEdit|Write",
"hooks": [
{
"type": "command",
"command": "$CLAUDE_PROJECT_DIR/.claude/hooks/protect_files_hook.py"
},
{
"type": "command",
"command": "$CLAUDE_PROJECT_DIR/.claude/hooks/validate_ai_review_pretool_hook.py"
}
]
}
]
}
} Skills (16)
aigr-pr-reviewannotation-reviewerbioinformatics-analyzerbioreason-predictionsbosscore-function-synthesizerexport-proposed-termsgocam-curationmodule-curationopenscientist-hypothesispathway-inference-agentpmreference-findings-summarizerreview-function-predictionreviewrule-reviewer
Hooks (5)
| event | matcher | runs |
|---|---|---|
| SessionStart | * | set -o pipefail; uv tool install rust-just 2>&1 | tail -1 && cd $CLAUDE_PROJECT_DIR && uv sync --group dev 2>&1 | tail -5 |
| PostToolUse | Edit|MultiEdit|Write | $CLAUDE_PROJECT_DIR/.claude/hooks/validate_ai_review_hook.py |
| PostToolUse | Edit|MultiEdit|Write | $CLAUDE_PROJECT_DIR/.claude/hooks/validate_rule_review_hook.py |
| PreToolUse | Edit|MultiEdit|Write | $CLAUDE_PROJECT_DIR/.claude/hooks/protect_files_hook.py |
| PreToolUse | Edit|MultiEdit|Write | $CLAUDE_PROJECT_DIR/.claude/hooks/validate_ai_review_pretool_hook.py |
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