K-Dense-AI/scientific-agent-skills
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discove
ARCHETYPE
Skill Collector
Ten-plus skills loaded on demand. A procedural-knowledge library.
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# review before running: this installs third-party code
$ npx degit K-Dense-AI/scientific-agent-skills/skills ./rig-scientific-agent-skills/skills MCP servers are added to Claude Code at local scope; env vars are shown as YOUR_… placeholders — we never store values. Files are fetched with degit into a separate folder so you can review before merging.
$ npx degit K-Dense-AI/scientific-agent-skills/skills/13c-metabolic-flux .claude/skills/13c-metabolic-flux $ npx degit K-Dense-AI/scientific-agent-skills/skills/adaptyv .claude/skills/adaptyv $ npx degit K-Dense-AI/scientific-agent-skills/skills/aeon .claude/skills/aeon $ npx degit K-Dense-AI/scientific-agent-skills/skills/alphagenome .claude/skills/alphagenome $ npx degit K-Dense-AI/scientific-agent-skills/skills/analytical-method-validation .claude/skills/analytical-method-validation $ npx degit K-Dense-AI/scientific-agent-skills/skills/anndata .claude/skills/anndata $ npx degit K-Dense-AI/scientific-agent-skills/skills/arbor .claude/skills/arbor $ npx degit K-Dense-AI/scientific-agent-skills/skills/arboreto .claude/skills/arboreto $ npx degit K-Dense-AI/scientific-agent-skills/skills/astropy .claude/skills/astropy $ npx degit K-Dense-AI/scientific-agent-skills/skills/autoskill .claude/skills/autoskill $ npx degit K-Dense-AI/scientific-agent-skills/skills/benchling-integration .claude/skills/benchling-integration $ npx degit K-Dense-AI/scientific-agent-skills/skills/bgpt-paper-search .claude/skills/bgpt-paper-search $ npx degit K-Dense-AI/scientific-agent-skills/skills/bids .claude/skills/bids $ npx degit K-Dense-AI/scientific-agent-skills/skills/biopython .claude/skills/biopython $ npx degit K-Dense-AI/scientific-agent-skills/skills/bioservices .claude/skills/bioservices $ npx degit K-Dense-AI/scientific-agent-skills/skills/bulk-rnaseq .claude/skills/bulk-rnaseq $ npx degit K-Dense-AI/scientific-agent-skills/skills/cantera .claude/skills/cantera $ npx degit K-Dense-AI/scientific-agent-skills/skills/cellprofiler .claude/skills/cellprofiler $ npx degit K-Dense-AI/scientific-agent-skills/skills/cellxgene-census .claude/skills/cellxgene-census $ npx degit K-Dense-AI/scientific-agent-skills/skills/cirq .claude/skills/cirq $ npx degit K-Dense-AI/scientific-agent-skills/skills/citation-management .claude/skills/citation-management $ npx degit K-Dense-AI/scientific-agent-skills/skills/clinical-decision-support .claude/skills/clinical-decision-support $ npx degit K-Dense-AI/scientific-agent-skills/skills/clinical-reports .claude/skills/clinical-reports $ npx degit K-Dense-AI/scientific-agent-skills/skills/cobrapy .claude/skills/cobrapy $ npx degit K-Dense-AI/scientific-agent-skills/skills/consciousness-council .claude/skills/consciousness-council $ npx degit K-Dense-AI/scientific-agent-skills/skills/dask .claude/skills/dask $ npx degit K-Dense-AI/scientific-agent-skills/skills/database-lookup .claude/skills/database-lookup $ npx degit K-Dense-AI/scientific-agent-skills/skills/datalad .claude/skills/datalad $ npx degit K-Dense-AI/scientific-agent-skills/skills/datamol .claude/skills/datamol $ npx degit K-Dense-AI/scientific-agent-skills/skills/deepchem .claude/skills/deepchem $ npx degit K-Dense-AI/scientific-agent-skills/skills/deepspot-m .claude/skills/deepspot-m $ npx degit K-Dense-AI/scientific-agent-skills/skills/deeptools .claude/skills/deeptools $ npx degit K-Dense-AI/scientific-agent-skills/skills/depmap .claude/skills/depmap $ npx degit K-Dense-AI/scientific-agent-skills/skills/dhdna-profiler .claude/skills/dhdna-profiler $ npx degit K-Dense-AI/scientific-agent-skills/skills/diffdock .claude/skills/diffdock $ npx degit K-Dense-AI/scientific-agent-skills/skills/dnanexus-integration .claude/skills/dnanexus-integration $ npx degit K-Dense-AI/scientific-agent-skills/skills/esm .claude/skills/esm $ npx degit K-Dense-AI/scientific-agent-skills/skills/etetoolkit .claude/skills/etetoolkit $ npx degit K-Dense-AI/scientific-agent-skills/skills/exa-search .claude/skills/exa-search $ npx degit K-Dense-AI/scientific-agent-skills/skills/experimental-design .claude/skills/experimental-design
This rig commits no guardrails. Here is the community baseline instead — the deny/ask rules most often found across all 6,974 rigs:
{
"permissions": {
"deny": [
"Read(./.env)",
"Read(**/.env)",
"Read(~/.ssh/**)",
"Bash(rm -rf *)",
"Read(**/*.pem)",
"Bash(rm -rf /)",
"Bash(git push --force:*)",
"Bash(sudo *)",
"Read(~/.aws/**)",
"Bash(rm -rf /*)",
"Read(./.env.*)",
"Read(.env)",
"Bash(git push --force*)",
"Bash(rm -rf:*)",
"Read(**/.env.*)",
"Read(**/*.key)",
"Bash(sudo:*)",
"Bash(git reset --hard*)",
"Bash(git reset --hard:*)",
"Read(.env.*)"
],
"ask": [
"Bash(git push:*)",
"Bash(git push *)",
"Bash(git commit:*)",
"Bash(rm *)",
"Bash(rm:*)",
"Bash(npm publish:*)",
"Bash(wget *)",
"Bash(git rebase *)",
"Bash(gh pr merge *)",
"Bash(git commit *)"
]
}
} Skills (150)
13c-metabolic-fluxadaptyvaeonalphagenomeanalytical-method-validationanndataarborarboretoastropyautoskillbenchling-integrationbgpt-paper-searchbidsbiopythonbioservicesbulk-rnaseqcanteracellprofilercellxgene-censuscirqcitation-managementclinical-decision-supportclinical-reportscobrapyconsciousness-councildaskdatabase-lookupdataladdatamoldeepchemdeepspot-mdeeptoolsdepmapdhdna-profilerdiffdockdnanexus-integrationesmetetoolkitexa-searchexperimental-designexploratory-data-analysisfictivflowioflowkitfluidsimfolklore-variant-evidencegenerate-imagegenimlgenomic-coordinatesgenomic-intelligencegeomastergeopandasget-available-resourcesggetginkgo-cloud-labglycoengineeringgtarshistolabhugging-sciencehypogenichypothesis-generationimaging-data-commonsinfographicsiso-standards-readinesslab-hardware-cadlabarchive-integrationlamindblatchbio-integrationlatex-postersliteparseliterature-reviewmageckmarine-carbonate-chemistrymarkdown-mermaid-writingmarket-research-reportsmarkitdownmatchmsmatlabmatplotlibmedchemmodalmolecular-dynamicsmolfeatncats-araxnetworkxneurokit2neuropixels-analysisnextflownmrgluenwb-conversionomero-integrationonekgpdontology-term-resolutionopen-notebookopenpivopentrons-integrationoptimize-for-gpupacsomaticpaper-lookuppaperclippaperzillaparallel-webpathmlpathogen-variant-surveillancepathway-enrichmentpeer-reviewpennylanephylogeneticspi-agentpkpd-modelingpolars-biopolarspptx-postersprimekgprimer-designprotocolsio-integrationpufferlibpybammpycalphadpydeseq2pydicompyhealthpylabrobotpymatgenpymcpymoopyopenmspysampytdcpytorch-lightningpyzoteroqiime2-ampliconqiskitqutiprdkitrelionrelsa-severity-assessmentresearch-grantsresearch-lookuprowanscanpyscholar-evaluationscientific-brainstormingscientific-critical-thinkingscientific-schematicsscientific-slidesscientific-visualizationscientific-writingscikit-bioscikit-learn
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